PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7DL_F849918EA.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 164aa    MW: 17541.4 Da    PI: 10.034
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7DL_F849918EA.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-2961120159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dgy+WrKYGqK+ k++++pr+Y+rC++a +C+vkkkv+rsaed+ v++ tY g+Hnh 
  Traes_7DL_F849918EA.2  61 VKDGYQWRKYGQKVTKDNPCPRAYFRCSFApSCHVKKKVQRSAEDKAVLVATYDGDHNHA 120
                            58***************************99****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.33956122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-2860122IPR003657WRKY domain
SuperFamilySSF1182903.66E-2560122IPR003657WRKY domain
SMARTSM007745.3E-3261121IPR003657WRKY domain
PfamPF031068.1E-2462119IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
LAAAGSSGRF AVSVTVGPDQ AECTSVHEPC NSKRVRADEC KASRVSKLYV HADPSDLSLV  60
VKDGYQWRKY GQKVTKDNPC PRAYFRCSFA PSCHVKKKVQ RSAEDKAVLV ATYDGDHNHA  120
PPPKQQGSGG RKSGXRSRRT RISCAGACPA AAEARTFDGG AGGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-2146123175WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8273990.0KR827399.1 Triticum aestivum WRKY48 transcriptional factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146039.12e-54uncharacterized protein LOC100279570
SwissprotQ9C5T42e-40WRK18_ARATH; WRKY transcription factor 18
TrEMBLA0A096UW491e-116A0A096UW49_WHEAT; Uncharacterized protein
STRINGMLOC_70190.13e-80(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP182238103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.12e-40WRKY DNA-binding protein 18
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]